A very interesting thread, starts with small ship verses large ship universes, wanders into the morality of Zhodani psionics use, then moves into a consideration of the mechanics of jumping, and what might mess up a jump. As this is the "My Traveller Universe" forum, there is no "one" right answer. It is whatever works for you and me. So I will toss out my 2 Credits worth.
With respect to jumping, the system that I go with is based on the picture that appears on page 33 of Fighting Ships, Supplement 9, covering the jump ship. That shows a jump ship using an extensive system of cables to extend the volume of the jump field, mixed with H. Beam Piper's hyperdrive system in Space Viking, where if you come out too close to a massive gravitational body, your collapsing hyperspace field kicks you away from said body. Im my universe, a ship's hull is covered by a network of cables which serve to generate the jump field. When you jump, your drive generates an intense gravitational field, creating a temporary "wormhole", and then throws your ship through the wormhole. The harder the throw, i.e. the more energy expended, the greater the distance. Once in, you are not worried about being precipitated out by gravitational bodies between you and the jump target, at least to start. However, the wormhole field is only good for 168 hours or so, and begins to weaken close to the end of that time. At that point, if your jump passes in sufficiently close proximity to a large gravitational mass, you are precipitated out of jump space earlier than you want. If your destination planet is on the opposite side of the sun from your departure system, you will be bounced out somewhere around 50 to 100 diameters away from the system's primary star. I figure that a mass about the size of the Earth's Moon would be sufficient to do that. So if your destination system has an Asteroid Belt, you might have some problems, with the same for any outlying gas giants. That is not how I would do it if I were writing my own novel, but you play the hand that you are dealt.
I will be back later with some ideas on the small ship verses large ship, civilian ship verses navy ship issue.